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Human Gene Expression During Development

0Cells In
Adrenal
Cerebellum
Cerebrum
Eye
Heart
Intestine
Kidney
Liver
Lung
Muscle
Pancreas
Placenta
Spleen
Stomach
Thymus

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Sampled Data

To compare cell types across organs, we randomly sampled 5,000 cells per cell type per organ (or in cases where less than 5,000 cells of a given cell type were represented in a given organ, all cells were taken). The data comprise gene count information including a total of 377,456 cells.

Metadata

Annotation files for cell by gene count matrices

Differentially Expressed Gene List

We performed DE gene analysis to identify differentially expressed genes across main cell types within each organ. We the idenfied genes that are differentially expressed across 77 main cell types across organs.

Garnett Cell Type Classifiers

Garnett faciliates automated cell type classification from single-cell expression data. Garnett works by taking single-cell data, along with a cell type definition (marker) file, and training a regression-based classifier. Once a classifier is trained for a tissue/sample type, it can be applied to classify future datasets from similar tissues.